Sequence Alignment Publications

Publications in Sequence Alignment

Explore the most influential research papers and scholarly works that have shaped Sequence Alignment. Use the concept filter below to focus on a specific sub-area of research.

Sequence Alignment

6.9K

Publications

1.5M

Citations

Showing yearly statistics from 2000-2026.

Page 1

	Year	Citations
Basic local alignment search tool Stephen F. Altschul, Warren Gish, Webb Miller, Journal of Molecular Biology BioinformaticsEngineeringInformation RetrievalString-searching AlgorithmString Processing	1990	92.8K
Fast gapped-read alignment with Bowtie 2 Ben Langmead, Steven L. Salzberg Nature Methods Long-read SequencingSequence AssemblyNatural SciencesComputational BiologyMolecular Biology	2012	58.3K
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability Kazutaka Katoh, Daron M. Standley Molecular Biology and Evolution GeneticsMolecular BiologyMajor UpdateGenomicsSequence Alignment	2013	45.6K
MUSCLE: multiple sequence alignment with high accuracy and high throughput R. C. Edgar Nucleic Acids Research GeneticsMolecular BiologyGenomicsSequence AlignmentMuscle Program	2004	45.3K
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Julie Thompson Nucleic Acids Research EngineeringGeneticsMolecular BiologyGenomicsSequence Alignment	1997	39.1K
BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT T. A. Hall Nucleic Acids Symposium Series BioinformaticsEngineeringBioinformatics DatabaseMolecular EcologyGene Sequence Annotation	1999	38.7K
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools Christian Quast, Elmar Pruesse, Pelin Yilmaz, Nucleic Acids Research Ribosomal RnaGeneticsGenomicsSequence AlignmentArchaea	2012	32.2K
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences Journal of Molecular Evolution BiologyPhylogeneticsMolecular EcologyComparative GenomicsGenetics	1980	29.4K
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega Fabian Sievers, Andreas Wilm, David Dineen, Molecular Systems Biology Structural BioinformaticsScalable GenerationNatural SciencesSequence AnalysisMolecular Biology	2011	15.7K
Basic Local Alignment Search Tool Stephen F. Altschul Journal of Molecular Biology BioinformaticsEngineeringInformation RetrievalString-searching AlgorithmString Processing	1990	13.8K
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions Daehwan Kim, Geo Pertea, Cole Trapnell, Genome biology BioinformaticsGene Sequence AnnotationNatural SciencesGeneticsSequence Analysis	2013	13.4K
WebLogo: A Sequence Logo Generator: Figure 1 Gavin E. Crooks, Gary C. Hon, John‐Marc Chandonia, Genome Research Interactive VisualizationEngineeringSequence LogosGeneticsVisualization (Graphics)	2004	12.7K

Page 1